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1

Geometry and vibrational frequencies of the helical polypeptide complexes with ligand molecules

Olga Makshakova, Denis Chachkov, Elena Ermakova

Journal:

International Journal of Quantum Chemistry

Year:

2011

Language:

english

File:

PDF, 809 KB

english, 2011

2

NMR structure, conformational dynamics, and biological activity of Ps Def1 defensin from Pinus sylvestris

Khairutdinov, Bulat I., Ermakova, Elena A., Yusypovych, Yuri M., Bessolicina, Elena K., Tarasova, Nadezhda B., Toporkova, Yana Y., Kovaleva, Valentina, Zuev, Yuriy F., Nesmelova, Irina V.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2017

Language:

english

File:

PDF, 632 KB

english, 2017

3

Structure of Scots pine defensin 1 by spectroscopic methods and computational modeling

Ermakova, Elena A., Faizullin, Dzhigangir A., Idiyatullin, Bulat Z., Khairutdinov, Bulat I., Mukhamedova, Liya N., Tarasova, Nadezhda B., Toporkova, Yana Y., Osipova, Elena V., Kovaleva, Valentina, Go

Journal:

International Journal of Biological Macromolecules

Year:

2016

Language:

english

File:

PDF, 2.71 MB

english, 2016

4

The Sulfated Polysaccharides of Brown Algae and Products of Their Enzymatic Transformation as Potential Vaccine Adjuvants

Kuznetsova, Tatyana A., Persiyanova, Elena V., Ermakova, Svetlana P., Khotimchenko, Maxim Yu., Besednova, Natalya N.

Journal:

Natural Product Communications

Year:

2018

Language:

english

File:

PDF, 476 KB

english, 2018

5

Ab Initio Calculation of a Three-Body Potential To Be Applied in Simulations of Fluid Neon

Elena Ermakova, Jan Solca, Gerold Steinebrunner, Hanspeter Huber

Journal:

Chemistry - A European Journal

Year:

1998

Language:

english

File:

PDF, 113 KB

english, 1998

6

Chemical Accuracy Obtained in an Ab Initio Molecular Dynamics Simulation of a Fluid by Inclusion of a Three-Body Potential

Barbara Kirchner, Elena Ermakova, Jan Solca, Hanspeter Huber

Journal:

Chemistry - A European Journal

Year:

1998

Language:

english

File:

PDF, 119 KB

english, 1998

7

Many-body and quantum effects in the radial distribution function of liquid neon and argon

Elena Ermakova, Jan Solca, Hanspeter Huber, Dominik Marx

Journal:

Chemical Physics Letters

Year:

1995

Language:

english

File:

PDF, 477 KB

english, 1995

8

Effect of surface potential of reverse micelle on enzyme–substrate complex formation

Elena A. Ermakova, Natalia L. Zakhartchenko, Yuri F. Zuev

Journal:

Colloids and Surfaces A: Physicochemical and Engineering Aspects

Year:

2008

Language:

english

File:

PDF, 366 KB

english, 2008

9

Partial oxidation of methane on Pt-supported lanthanide doped ceria–zirconia oxides: Effect of the surface/lattice oxygen mobility on catalytic performance

Vladislav A. Sadykov, Nathalia N. Sazonova, Aleksei S. Bobin, Vitalii S. Muzykantov, Elena L. Gubanova, Galina M. Alikina, Anton I. Lukashevich, Vladimir A. Rogov, Eugenia N. Ermakova, Ekaterina M. Sa

Journal:

Catalysis Today

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

10

Rearrangements and proton transfer in nitrones by quantum chemistry and molecular dynamics

Roza M. Aminova, Elena Ermakova

Journal:

Chemical Physics Letters

Year:

2002

Language:

english

File:

PDF, 293 KB

english, 2002

11

On the relationship between the load and the variance of relative fitness

Emmanuil E Shnol, Elena A Ermakova, Alexey S Kondrashov

Journal:

Year:

2011

Language:

english

File:

PDF, 232 KB

english, 2011

12

Brownian dynamics simulation of substrate motion near active site of enzyme entrapped inside reverse micelle

Elena A. Ermakova, Nataliya L. Zakhartchenko, Yuri F. Zuev

Journal:

European Biophysics Journal

Year:

2010

Language:

english

File:

PDF, 388 KB

english, 2010

13

Lysozyme dimerization: brownian dynamics simulation

Journal:

Journal of Molecular Modeling

Year:

2005

Language:

english

File:

PDF, 427 KB

english, 2005

14

Computational study of hydrogen-bonding complex formation of helical polypeptides with water molecule

Olga Makshakova, Elena Ermakova

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

2010

Language:

english

File:

PDF, 625 KB

english, 2010

15

Bright far-red fluorescent protein for whole-body imaging

Shcherbo, Dmitry, Merzlyak, Ekaterina M, Chepurnykh, Tatiana V, Fradkov, Arkady F, Ermakova, Galina V, Solovieva, Elena A, Lukyanov, Konstantin A, Bogdanova, Ekaterina A, Zaraisky, Andrey G, Lukyanov,

Journal:

Year:

2007

Language:

english

File:

PDF, 267 KB

english, 2007

16

Brownian dynamics study of the selective orientation of a guest molecule in the surfactant shell of a reverse micelle

Elena A. Ermakova, Yuri F. Zuev

Journal:

Mendeleev Communications

Year:

2005

Language:

english

File:

PDF, 253 KB

english, 2005

17

Far-red fluorescent tags for protein imaging in living tissues

Shcherbo, Dmitry, Murphy, Christopher S., Ermakova, Galina V., Solovieva, Elena A., Chepurnykh, Tatiana V., Shcheglov, Aleksandr S., Verkhusha, Vladislav V., Pletnev, Vladimir Z., Hazelwood, Kristin L

Journal:

Biochemical Journal

Year:

2009

Language:

english

File:

PDF, 1013 KB

english, 2009

18

Avermectins inhibit multidrug resistance of tumor cells

Yuri N. Korystov, Natalia V. Ermakova, Ludmila N. Kublik, Maria Kh. Levitman, Vera V. Shaposhnikova, Vladimir A. Mosin, Viktor A. Drinyaev, Elena B. Kruglyak, Tamara S. Novik, Tatiana S. Sterlina

Journal:

European Journal of Pharmacology

Year:

2004

Language:

english

File:

PDF, 282 KB

english, 2004

19

Antitumor effect of avermectins

Victor A. Drinyaev, Vladimir A. Mosin, Elena B. Kruglyak, Tamara S. Novik, Tatiana S. Sterlina, Natalia V. Ermakova, Ludmila N. Kublik, Maria Kh. Levitman, Vera V. Shaposhnikova, Yuri N. Korystov

Journal:

European Journal of Pharmacology

Year:

2004

Language:

english

File:

PDF, 233 KB

english, 2004

20

Comparison of reactive processes in the rat brain elicited by xenotransplantation of nervous tissues of chicken or pulmonate snail

Elena V Loseva, Valentin N Vorobyev, Irina V Ermakova, Nadegda N Lermontova, Tiyna G Alekseeva, Igor S Zakharov, Pavel M Balaban

Journal:

Year:

2001

Language:

english

File:

PDF, 1.47 MB

english, 2001

21

Lactose Binding to Galectin-1 Modulates Structural Dynamics, Increases Conformational Entropy, and Occurs with Apparent Negative Cooperativity

Irina V. Nesmelova, Elena Ermakova, Vladimir A. Daragan, Mabel Pang, Margarita Menéndez, Laura Lagartera, Dolores Solís, Linda G. Baum, Kevin H. Mayo

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 2.67 MB

english, 2010

22

The homeodomain factor Xanf represses expression of genes in the presumptive rostral forebrain that specify more caudal brain regions

Galina V. Ermakova, Elena A. Solovieva, Natalia Y. Martynova, Andrey G. Zaraisky

Journal:

Developmental Biology

Year:

2007

Language:

english

File:

PDF, 2.24 MB

english, 2007

23

Anf: a novel class of vertebrate homeobox genes expressed at the anterior end of the main embryonic axis

Olga V Kazanskaya, Elena A Severtzova, K Anukampa Barth, Galina V Ermakova, Sergey A Lukyanov, Alex O Benyumov, Maria Pannese, Edoardo Boncinelli, Stephen W Wilson, Andrey G Zaraisky

Journal:

Year:

1997

Language:

english

File:

PDF, 260 KB

english, 1997

24

Lactose Binding To Galectin-1 Occurs With Negative Cooperativity and Attenuates Internal Motions Throughout the Protein

Nesmelova, Irina V., Ermakova, Elena, Daragan, Vladimir A., Pang, Mabel, Baum, Linda G., Mayo, Kevin H.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 35 KB

english, 2010

25

04-P001 Noggin2 can modulate activin signaling and is essential for normal forebrain development

Andrey V. Bayramov, Fedor M. Eroshkin, Natalia Yu Martynova, Galina V. Ermakova, Elena A. Solovieva, Marina V. Serebryakova, Anrdey G. Zaraisky

Journal:

Mechanisms of Development

Year:

2009

Language:

english

File:

PDF, 85 KB

english, 2009

26

A Molecular-Mechanical Model of the Microtubule

Molodtsov, Maxim I., Ermakova, Elena A., Shnol, Emmanuil E., Grishchuk, Ekaterina L., McIntosh, J. Richard, Ataullakhanov, Fazly I.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 328 KB

english, 2005

27

Blood Coagulation and Propagation of Autowaves in Flow

Ermakova, Elena A., Panteleev, Mikhail A., Shnol, Emmanuil E.

Journal:

Pathophysiology of Haemostasis and Thrombosis

Year:

2005

Language:

english

File:

PDF, 215 KB

english, 2005

28

Ab initio calculation of the NMR spin-lattice relaxation time and the diffusion coefficient of 21Ne in liquid and supercritical states

KIRCHNER, BARBARA, ERMAKOVA, ELENA, STEINEBRUNNER, GEROLD, DYSON, ANTHONY J., HUBER, HANSPETER

Journal:

Molecular Physics

Year:

1998

Language:

english

File:

PDF, 299 KB

english, 1998

29

Argon in condensed phase: Quantitative calculations of structural, thermodynamic, and transport properties from pure theory

Ermakova, Elena, Solca, Jan, Huber, Hanspeter, Welker, Marc

Journal:

The Journal of Chemical Physics

Year:

1995

Language:

english

File:

PDF, 470 KB

english, 1995

30

Effect of ligand binding on the dynamics of trypsin. Comparison of different approaches

Ermakova, Elena, Kurbanov, Rauf

Journal:

Journal of Molecular Graphics and Modelling

Year:

2014

Language:

english

File:

PDF, 2.44 MB

english, 2014

31

Dirofilaria repens in the Russian Federation: current epidemiology, diagnosis, and treatment from a federal reference center perspective

Ermakova, Larisa Alexandrovna, Nagorny, Sergey Andreevich, Krivorotova, Elena Yurievna, Pshenichnaya, Natalia Yurievna, Matina, Olga Nikolaevna

Journal:

International Journal of Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

32

Effect of organic molecules on hydrolysis of peptide bond: A DFT study

Makshakova, Olga, Ermakova, Elena

Journal:

Chemical Physics

Year:

2013

Language:

english

File:

PDF, 874 KB

english, 2013

33

Obituary

Makshakova, Olga, Ermakova, Elena

Journal:

Year:

1965

Language:

english

File:

PDF, 152 KB

english, 1965

34

Stabilization Effects of Disulfide Bonds and Dimerization on Cxcl7

Singer, Christopher, Herring, Charles, Ermakova, Elena, Khairutdinov, Bulat, Zuev, Yuri, Jacobs, Donald, Nesmelova, Irina

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

35

Supramolecular complex formed by DNA oligonucleotide and thiacalix[4]arene. NMR-spectroscopy and molecular docking

Khairutdinov, Bulat, Ermakova, Elena, Sitnitsky, Aleksandr, Stoikov, Ivan, Zuev, Yuriy

Journal:

Journal of Molecular Structure

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

36

Comments in response to the authors of “Human dirofilariasis due to Dirofilaria repens in the Russian Federation—remarks concerning epidemiology”

Ermakova, Larisa Alexandrovna, Nagorny, Sergey Andreevich, Pshenichnaya, Natalia Yurievna, Krivirotova, Elena Yurievna

Journal:

International Journal of Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 221 KB

english, 2014

37

ROYAL ACADEMY OF MEDICINE IN IRELAND.

Ermakova, Larissa Alexandrovna, Nagorny, Sergey Andreevich, Pshenichnaya, Natalia Yurievna, Krivirotova, Elena Yurievna

Journal:

Year:

1902

Language:

english

File:

PDF, 856 KB

english, 1902

38

Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein

Serebrovskaya, Ekaterina O., Gorodnicheva, Tatiana V., Ermakova, Galina V., Solovieva, Elena A., Sharonov, George V., Zagaynova, Elena V., Chudakov, Dmitriy M., Lukyanov, Sergey, Zaraisky, Andrey G.,

Journal:

Biochemical Journal

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

39

Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level

Pereverzev, Anton P., Gurskaya, Nadya G., Ermakova, Galina V., Kudryavtseva, Elena I., Markina, Nadezhda M., Kotlobay, Alexey A., Lukyanov, Sergey A., Zaraisky, Andrey G., Lukyanov, Konstantin A.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

40

Structural basis for regulation of stability and activity in glyceraldehyde-3-phosphate dehydrogenases. Differential scanning calorimetry and molecular dynamics

Makshakova, Olga N., Semenyuk, Pavel I., Kuravsky, Mikhail L., Ermakova, Elena A., Zuev, Yuriy F., Muronetz, Vladimir I.

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 3.26 MB

english, 2015

41

Structural, biocomplexation and gene delivery properties of hydroxyethylated gemini surfactants with varied spacer length

Zakharova, Lucia Ya., Gabdrakhmanov, Dinar R., Ibragimova, Alsu R., Vasilieva, Elmira A., Nizameev, Irek R., Kadirov, Marsil K., Ermakova, Elena A., Gogoleva, Natalia E., Faizullin, Dzhigangir A., Pok

Journal:

Colloids and Surfaces B: Biointerfaces

Year:

2015

Language:

english

File:

PDF, 750 KB

english, 2015

42

Dynamics and thermodynamic properties of CXCL7 chemokine

Herring, Charles A., Singer, Christopher M., Ermakova, Elena A., Khairutdinov, Bulat I., Zuev, Yuriy F., Jacobs, Donald J., Nesmelova, Irina V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

43

[ACM Press the 31st Annual ACM Symposium - Pisa, Italy (2016.04.04-2016.04.08)] Proceedings of the 31st Annual ACM Symposium on Applied Computing - SAC '16 - Proximity relevance model for query expansion

Ermakova, Liana, Mothe, Josiane, Nikitina, Elena

Year:

2016

Language:

english

File:

PDF, 689 KB

english, 2016

44

Structural insight into the glucokinase-ligands interactions. Molecular docking study

Ermakova, Elena

Journal:

Computational Biology and Chemistry

Year:

2016

Language:

english

File:

PDF, 794 KB

english, 2016

45

Interaction of Scots Pine Defensin with Model Membrane by Coarse-Grained Molecular Dynamics

Ermakova, Elena, Zuev, Yuriy

Journal:

Journal of Membrane Biology

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

46

Effect of ergosterol on the fungal membrane properties. All-atom and coarse-grained molecular dynamics study

Ermakova, Elena, Zuev, Yuriy

Journal:

Chemistry and Physics of Lipids

Year:

2017

Language:

english

File:

PDF, 769 KB

english, 2017

47

On Propagation of Excitation Waves in Moving Media: The FitzHugh-Nagumo Model

Ermakova, Elena A., Shnol, Emmanuil E., Panteleev, Mikhail A., Butylin, Andrey A., Volpert, Vitaly, Ataullakhanov, Fazoil I., Khanin, Raya

Journal:

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

48

Coarse-grained molecular dynamics of membrane semitoroidal pore formation in model lipid-peptide systems

Ermakova, Elena, Kurbanov, Rauf, Zuev, Yuriy

Journal:

Journal of Molecular Graphics and Modelling

Year:

2018

Language:

english

File:

PDF, 2.62 MB

english, 2018

49

Branching random walks and their applications for epidemic modeling

Ermakova, Elizaveta, Makhmutova, Polina, Yarovaya, Elena

Journal:

Stochastic Models

Year:

2019

Language:

english

File:

PDF, 1.46 MB

english, 2019

50

Pyridine analogue of fluorescent protein chromophore: Fluorogenic dye suitable for mitochondria staining

Ermakova, Yulia G., Bogdanova, Yulia A., Baleeva, Nadezhda S., Zaitseva, Snizhana O., Guglya, Elena B., Smirnov, Alexander Yu., Zagudaylova, Marina B., Baranov, Mikhail S.

Journal:

Dyes and Pigments

Year:

2019

Language:

english

File:

PDF, 1.28 MB

english, 2019

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